PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.307920.1
Common NameCsa_5G623840, LOC101220990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SRS
Protein Properties Length: 284aa    MW: 29868.1 Da    PI: 8.6677
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.307920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702193.76.2e-60982636154
          DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelks.kkqsalsstklss 93 
                     a C+dCGn+akk+C+++RCRtCCk rg +C+thvkstWvpaa+rrerq    +    +a+        ++a +kr+r l   ++++a++++++s+
  Cucsa.307920.1  98 AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDggssgsSSAGAKRPRVLIPsQSAAAAAAASTSN 192
                     68*********************************************987766554444444566676888899999885515556677889999 PP

          DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     a++++++et+s          lP +v+++avfrc rv++++ ge elaYq++v+igGhvfkG+LydqG+++
  Cucsa.307920.1 193 ATTPRSFETTSshqdasfkksLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADD 263
                     *****99999999*******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.9E-5798262IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-2499141IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.1E-26214260IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
TQIISSDHHP SLPLPSSTAL GVSVGIFPLL AATPCLPPSQ PPPNNHTPDD VTDRTRTFDN  60
LKRTQDFGFG KGESLIAGPG NNGSDEHVKG DAGDGSMAVC RDCGNRAKKE CEYRRCRTCC  120
KGRGNHCSTH VKSTWVPAAR RRERQMLVVM DGVATASGDG GSSGSSSAGA KRPRVLIPSQ  180
SAAAAAAAST SNATTPRSFE TTSSHQDASF KKSLPGHVRA PAVFRCHRVT AISSGEGELA  240
YQATVNIGGH VFKGFLYDQG ADDKNAFPSI SHLHLDSGNH HRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142483.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-58LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0A0KWX60.0A0A0A0KWX6_CUCSA; Uncharacterized protein
STRINGGLYMA04G17885.13e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.25e-55Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]